| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_13 | 1380293 | A | C | 10 | 304.78 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 1706462 | G | C | 24 | 256.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 1707497 | C | A | 16 | 49.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 2160500 | A | T | 10 | 30.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 2297828 | T | A | 43 | 1573.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 2299363 | C | G | 90 | 109.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 2434140 | A | T | 25 | 645.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 2445794 | T | G | 43 | 131.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 2446010 | C | A | 89 | 2570.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 2446012 | A | T | 85 | 2459.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 2611880 | A | T | 39 | 32.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 2612138 | A | C | 34 | 1053.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 2656293 | G | T | 187 | 134.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 2660358 | A | T | 111 | 2016.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 2718040 | T | A | 23 | 43.77 | CDS | Transversion | 0/1 | Aspartyl protease family protein At5g10770 (EC 3.4.23.-) |
| Scaffold_13 | 2837419 | G | T | 21 | 633.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 2925878 | C | G | 17 | 600.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 3269621 | C | A | 10 | 206.82 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 3288946 | T | A | 16 | 423.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 3298493 | C | G | 39 | 1219.77 | intron | Transversion | 1/1 | Unannotated |