| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_15 | 2484868 | A | C | 10 | 33.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_15 | 2551199 | A | T | 31 | 503.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 246075 | G | T | 18 | 616.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_16 | 544196 | G | T | 23 | 695.84 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_16 | 614351 | T | G | 17 | 603.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_16 | 814678 | T | A | 10 | 195.9 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_16 | 846329 | G | T | 12 | 405.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_16 | 852148 | A | C | 10 | 30.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1148547 | A | C | 33 | 1029.77 | exon | Transversion | 1/1 | General transcription and DNA repair factor IIH helicase subunit XPD (TFIIH subunit XPD) (EC 3.6.4.12) (ERCC2 homolog) (RAD3 homolog) (UV hypersensitive protein 6) (AtUVH6) (XPD homolog) (AtXPD) |
| Scaffold_16 | 1171363 | C | G | 11 | 254.8 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_16 | 1339476 | C | A | 11 | 396.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_16 | 1513807 | T | A | 12 | 431.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_16 | 1515531 | A | T | 62 | 1226.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1604873 | A | T | 154 | 3218.75 | CDS | Transversion | 0/1 | 2-hydroxyisoflavanone dehydratase (EC 3.1.1.1) (EC 4.2.1.105) (Carboxylesterase HIDM) |
| Scaffold_16 | 1662038 | T | A | 14 | 55.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_17 | 14089 | T | A | 26 | 622.77 | exon | Transversion | 1/1 | Putative serine/threonine-protein kinase-like protein CCR3 (EC 2.7.11.1) (Protein CRINKLY 4 RELATED 3) (AtCRR3) |
| Scaffold_17 | 45847 | T | A | 19 | 112.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_17 | 45873 | A | T | 12 | 78.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_17 | 142583 | G | T | 82 | 1673.77 | exon | Transversion | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 142682 | G | C | 57 | 161.77 | exon | Transversion | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |