| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_20 | 92396 | C | G | 14 | 39.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 188854 | A | T | 11 | 304.78 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_20 | 269634 | A | C | 250 | 147.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 508259 | T | A | 10 | 359.77 | noncoding | Transversion | 1/1 | Importin subunit alpha-1a |
| Scaffold_20 | 532432 | C | G | 39 | 1159.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_20 | 717618 | G | C | 13 | 413.77 | exon | Transversion | 1/1 | Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 |
| Scaffold_20 | 916879 | A | T | 13 | 345.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 947299 | C | A | 32 | 990.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_20 | 1061282 | T | G | 15 | 197.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 1073386 | T | G | 13 | 209.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 1073390 | A | C | 27 | 127.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 1073391 | G | C | 33 | 115.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 1272134 | A | C | 18 | 82.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_20 | 1729177 | G | T | 11 | 294.78 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_21 | 73480 | T | G | 11 | 32.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_21 | 127556 | G | C | 19 | 216.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_21 | 167115 | A | C | 29 | 50.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_21 | 167116 | A | T | 29 | 47.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_21 | 209586 | C | A | 14 | 80.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_21 | 679806 | A | C | 17 | 43.77 | noncoding | Transversion | 0/1 | Unannotated |