| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_26 | 1367640 | G | T | 13 | 95.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_26 | 1370017 | A | T | 10 | 335.78 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_26 | 1533524 | G | T | 12 | 149.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_26 | 1533525 | T | G | 11 | 126.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_26 | 1537210 | T | A | 15 | 74.77 | CDS | Transversion | 0/1 | Threonine--tRNA ligase, chloroplastic/mitochondrial 2 (EC 6.1.1.3) (Protein EMBRYO DEFECTIVE 2761) (Threonyl-tRNA synthetase) (ThrRS) |
| Scaffold_26 | 1712852 | A | C | 23 | 605.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_26 | 2059417 | A | T | 24 | 68.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 84224 | C | A | 10 | 95.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 84287 | T | G | 50 | 255.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 113999 | C | G | 10 | 265.8 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_27 | 304459 | T | A | 12 | 61.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 319381 | T | G | 22 | 200.77 | exon | Transversion | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_27 | 319417 | C | G | 26 | 457.77 | exon | Transversion | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_27 | 319597 | G | C | 15 | 100.77 | exon | Transversion | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_27 | 480791 | C | A | 10 | 354.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_27 | 487857 | T | G | 24 | 37.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 591853 | G | C | 108 | 176.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 643323 | G | C | 41 | 930.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_27 | 767795 | G | T | 14 | 30.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 788848 | T | G | 24 | 101.77 | CDS | Transversion | 0/1 | Unannotated |