| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_29 | 1199729 | A | C | 45 | 41.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1199846 | C | G | 11 | 101.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1319589 | C | A | 13 | 461.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_29 | 1319590 | C | A | 12 | 436.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_29 | 1429381 | G | T | 16 | 474.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_29 | 1521576 | T | G | 12 | 39.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 128331 | A | T | 11 | 387.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_30 | 128332 | T | G | 13 | 473.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_30 | 148068 | C | G | 11 | 252.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 151333 | C | A | 10 | 227.84 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_30 | 351177 | A | C | 250 | 340.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 351178 | A | T | 250 | 697.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 529564 | C | G | 250 | 9034.77 | exon | Transversion | 1/1 | ATP synthase delta chain, chloroplastic (F-ATPase delta chain) |
| Scaffold_30 | 529567 | G | T | 250 | 8907.77 | exon | Transversion | 1/1 | ATP synthase delta chain, chloroplastic (F-ATPase delta chain) |
| Scaffold_30 | 571884 | A | T | 11 | 237.84 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_30 | 620108 | C | G | 18 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 655017 | A | C | 24 | 782.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_30 | 655019 | A | C | 35 | 272.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 696714 | G | T | 10 | 341.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_30 | 754248 | T | A | 24 | 738.77 | CDS | Transversion | 1/1 | Nuclear pore complex protein GP210 (Nuclear pore membrane glycoprotein 210) (Nucleoporin GP210) (Protein EMBRYO DEFECTIVE 3012) |