| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_38 | 1450202 | G | C | 10 | 266.8 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_38 | 1694473 | C | A | 45 | 1274.77 | exon | Transversion | 1/1 | Kinesin-like protein KIN-13A (AtKINESIN-13A) (AtKIN13A) |
| Scaffold_38 | 1695891 | A | T | 16 | 52.77 | CDS | Transversion | 0/1 | Kinesin-like protein KIN-13A (AtKINESIN-13A) (AtKIN13A) |
| Scaffold_38 | 1885334 | C | A | 10 | 318.78 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_40 | 39649 | A | T | 28 | 159.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 39705 | C | G | 16 | 334.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 39962 | C | A | 51 | 792.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 40158 | T | A | 16 | 180.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 40360 | A | C | 27 | 412.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 136449 | T | G | 13 | 55.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 206302 | A | T | 29 | 113.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 207305 | C | A | 55 | 340.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 257075 | A | T | 15 | 190.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 348653 | T | A | 91 | 272.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 392385 | C | A | 10 | 341.78 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_40 | 513506 | A | C | 34 | 42.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 625950 | G | T | 78 | 1583.77 | CDS | Transversion | 0/1 | Acyl-coenzyme A oxidase 3, peroxisomal (AOX 3) (Acyl-CoA oxidase 3) (EC 1.3.3.6) (Medium-chain acyl-CoA oxidase) (AtCX3) |
| Scaffold_40 | 1249132 | T | A | 17 | 52.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 1267142 | T | G | 32 | 211.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_40 | 1267334 | G | C | 14 | 375.22 | noncoding | Transversion | 0/1 | Unannotated |