| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_47 | 1151926 | A | T | 221 | 3067.77 | CDS | Transversion | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1154138 | G | T | 66 | 1808.77 | exon | Transversion | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1154195 | T | A | 249 | 8418.77 | exon | Transversion | 1/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1356959 | G | C | 12 | 169.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_47 | 1402030 | G | T | 80 | 1461.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_47 | 1721161 | T | G | 12 | 36.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_47 | 1757521 | A | C | 27 | 50.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 12570 | A | C | 13 | 58.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 12571 | T | A | 20 | 68.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 231701 | G | T | 43 | 729.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 231752 | A | C | 49 | 196.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 232105 | A | C | 18 | 589.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_48 | 232425 | G | C | 13 | 221.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 389954 | G | C | 10 | 42.77 | exon | Transversion | 0/1 | Pentatricopeptide repeat-containing protein At1g03560, mitochondrial |
| Scaffold_48 | 681139 | C | A | 10 | 375.77 | CDS | Transversion | 1/1 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (EC 2.7.11.1) |
| Scaffold_48 | 702998 | A | C | 39 | 1158.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_48 | 1107032 | T | A | 13 | 200.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1128413 | G | C | 67 | 1121.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1323328 | A | T | 11 | 190.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1344016 | A | T | 37 | 1175.77 | exon | Transversion | 1/1 | Unannotated |