| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_52 | 148187 | T | A | 22 | 45.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_52 | 296187 | G | T | 21 | 564.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_52 | 1135776 | A | C | 24 | 690.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_52 | 1288876 | T | G | 12 | 366.31 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_52 | 1589394 | G | C | 12 | 288.78 | intron | Transversion | 1/1 | ATP-dependent helicase BRM (EC 3.6.4.12) (Protein BRAHMA) (AtBRM) (Protein CHROMATIN REMODELING 2) (AtCHR2) |
| Scaffold_52 | 1604125 | G | C | 52 | 178.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_52 | 1663523 | T | A | 118 | 3161.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_52 | 1663781 | A | T | 92 | 2345.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_52 | 1663783 | T | A | 93 | 2308.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_52 | 1663856 | G | C | 84 | 2308.03 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_52 | 1663982 | A | C | 61 | 2184.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_52 | 1664000 | G | C | 42 | 1349.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_52 | 1664177 | A | T | 61 | 2024.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_52 | 1664296 | C | G | 98 | 2908.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_52 | 1665257 | C | A | 18 | 627.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_52 | 1665258 | T | G | 18 | 609.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_53 | 84172 | G | T | 25 | 39.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_53 | 102873 | A | T | 67 | 844.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_53 | 102978 | T | A | 19 | 236.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_53 | 104628 | A | T | 12 | 146.77 | intron | Transversion | 0/1 | Unannotated |