| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_69 | 839220 | A | T | 20 | 136.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_69 | 1003562 | C | A | 18 | 446.77 | CDS | Transversion | 1/1 | Methyl-CpG-binding domain-containing protein 9 (AtMBD9) (MBD09) (EC 2.3.1.48) (Histone acetyl transferase MBD9) (Methyl-CpG-binding protein MBD9) |
| Scaffold_69 | 1009282 | T | G | 20 | 31.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_69 | 1065871 | A | T | 21 | 314.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_69 | 1065872 | T | G | 19 | 268.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_69 | 1066467 | T | G | 10 | 269.8 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_70 | 224456 | C | G | 95 | 1238.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_70 | 335180 | G | T | 32 | 993.77 | exon | Transversion | 1/1 | Beta-(1,2)-xylosyltransferase (EC 2.4.2.38) |
| Scaffold_70 | 529630 | A | T | 14 | 43.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_70 | 533762 | C | A | 96 | 216.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_70 | 565363 | G | T | 11 | 349.78 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_70 | 565367 | C | A | 11 | 346.78 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_70 | 780177 | T | G | 20 | 37.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_70 | 805588 | T | G | 22 | 40.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_70 | 806979 | C | G | 71 | 1615.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_70 | 807110 | T | A | 14 | 52.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_71 | 75495 | T | G | 14 | 52.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_71 | 169752 | C | G | 22 | 505.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_71 | 181299 | A | T | 33 | 1148.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_71 | 356491 | G | T | 19 | 390.77 | exon | Transversion | 0/1 | Unannotated |