| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_94 | 352052 | C | A | 47 | 381.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_95 | 228961 | G | T | 67 | 1970.77 | exon | Transversion | 1/1 | Scarecrow-like protein 1 (AtSCL1) (GRAS family protein 4) (AtGRAS-4) |
| Scaffold_96 | 133192 | T | G | 31 | 1043.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_96 | 135626 | C | G | 18 | 615.77 | intron | Transversion | 1/1 | Aldehyde dehydrogenase family 2 member B4, mitochondrial (ALDH2a) (EC 1.2.1.3) |
| Scaffold_96 | 135627 | T | G | 24 | 874.77 | intron | Transversion | 1/1 | Aldehyde dehydrogenase family 2 member B4, mitochondrial (ALDH2a) (EC 1.2.1.3) |
| Scaffold_96 | 135759 | C | G | 27 | 976.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_96 | 366816 | C | A | 15 | 524.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_97 | 68809 | A | C | 10 | 110.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_98 | 107315 | T | A | 29 | 815.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_98 | 193622 | T | G | 27 | 963.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_99 | 29809 | A | C | 78 | 1601.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_99 | 29817 | A | C | 250 | 178.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_99 | 30061 | G | C | 250 | 79.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_100 | 138081 | A | C | 29 | 1005.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_100 | 138915 | T | G | 24 | 308.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_100 | 139368 | T | A | 43 | 1135.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_100 | 148698 | T | G | 80 | 2044.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_100 | 260643 | A | C | 44 | 39.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_100 | 322076 | A | C | 10 | 72.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_100 | 432707 | G | T | 10 | 312.78 | intron | Transversion | 1/1 | Unannotated |