| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_139 | 274480 | G | C | 54 | 1421.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_140 | 214443 | A | C | 10 | 115.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_140 | 215623 | A | T | 30 | 838.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_140 | 216428 | T | G | 38 | 1040.78 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_140 | 216536 | G | T | 158 | 4336.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_140 | 217334 | A | C | 15 | 422.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_140 | 372753 | G | T | 15 | 526.77 | intron | Transversion | 1/1 | UDP-D-apiose/UDP-D-xylose synthase 2 |
| Scaffold_140 | 458819 | G | C | 16 | 352.78 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_141 | 21897 | C | A | 10 | 267.8 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_141 | 299970 | C | A | 43 | 594.77 | CDS | Transversion | 0/1 | Soyasaponin III rhamnosyltransferase (EC 2.4.1.273) (Soyasaponin glycosyltransferase 3) (UDP-rhamnose:soyasaponin III-rhamnosyltransferase) |
| Scaffold_141 | 302918 | A | T | 44 | 1458.77 | CDS | Transversion | 1/1 | Soyasaponin III rhamnosyltransferase (EC 2.4.1.273) (Soyasaponin glycosyltransferase 3) (UDP-rhamnose:soyasaponin III-rhamnosyltransferase) |
| Scaffold_141 | 302949 | G | T | 18 | 325.77 | CDS | Transversion | 0/1 | Soyasaponin III rhamnosyltransferase (EC 2.4.1.273) (Soyasaponin glycosyltransferase 3) (UDP-rhamnose:soyasaponin III-rhamnosyltransferase) |
| Scaffold_141 | 305572 | C | A | 13 | 311.77 | exon | Transversion | 0/1 | Soyasaponin III rhamnosyltransferase (EC 2.4.1.273) (Soyasaponin glycosyltransferase 3) (UDP-rhamnose:soyasaponin III-rhamnosyltransferase) |
| Scaffold_141 | 311019 | A | C | 17 | 205.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_141 | 330970 | T | G | 13 | 49.77 | exon | Transversion | 0/1 | Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.4.19.12) (Deubiquitinating enzyme 24) (AtUBP24) (Ubiquitin thioesterase 24) (Ubiquitin-specific-processing protease 24) |
| Scaffold_142 | 207124 | C | G | 247 | 406.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_142 | 457995 | C | A | 23 | 717.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_142 | 468092 | C | A | 26 | 696.77 | CDS | Transversion | 1/1 | Probable ubiquitin-like-specific protease 2B (EC 3.4.22.-) |
| Scaffold_142 | 529975 | C | A | 53 | 1639.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_142 | 548923 | C | A | 13 | 345.78 | exon | Transversion | 1/1 | Unannotated |