RGC-1066 SNPs

SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_158 456351 G C 23 786.77 CDS Transversion 1/1 Unannotated
Scaffold_158 456372 T G 31 1041.77 intron Transversion 1/1 Unannotated
Scaffold_158 456403 A T 32 1059.77 intron Transversion 1/1 Unannotated
Scaffold_159 219855 A T 16 274.77 transcription_end_site Transversion 0/1 Unannotated
Scaffold_159 219857 A T 36 243.77 exon Transversion 0/1 Unannotated
Scaffold_159 220040 A T 249 2378.77 exon Transversion 0/1 Unannotated
Scaffold_159 220447 A C 250 802.77 exon Transversion 0/1 Unannotated
Scaffold_159 220704 C A 86 2737.77 exon Transversion 1/1 Unannotated
Scaffold_159 220706 G C 69 2468.77 exon Transversion 1/1 Unannotated
Scaffold_159 258175 A C 10 359.77 noncoding Transversion 1/1 Unannotated
Scaffold_159 258176 G T 14 494.77 noncoding Transversion 1/1 Unannotated
Scaffold_160 15703 T A 34 734.77 CDS Transversion 0/1 Clathrin heavy chain 2
Scaffold_160 19560 A C 10 232.84 noncoding Transversion 1/1 Unannotated
Scaffold_160 148272 T G 23 31.77 exon Transversion 0/1 Unannotated
Scaffold_160 323018 T A 25 719.77 CDS Transversion 1/1 Unannotated
Scaffold_160 335753 G C 21 709.77 CDS Transversion 1/1 Unannotated
Scaffold_160 358337 A T 34 1066.9 intron Transversion 1/1 Unannotated
Scaffold_160 358782 A T 15 52.77 intron Transversion 0/1 Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (EC 1.10.9.1) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (Rieske iron-sulfur protein) (ISP) (RISP)
Scaffold_160 359363 T A 63 64.77 intron Transversion 0/1 Unannotated
Scaffold_160 410943 T A 12 255.77 intron Transversion 0/1 Unannotated