| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2888 | 20120 | T | C | 52 | 114.77 | CDS | Transition | 0/1 | 60S ribosomal protein L6-3 |
| Scaffold_2888 | 20123 | C | T | 52 | 106.77 | CDS | Transition | 0/1 | 60S ribosomal protein L6-3 |
| Scaffold_1117 | 15757 | A | G | 90 | 249.77 | noncoding | Transition | 0/1 | 60S ribosomal protein L7-2 |
| Scaffold_3259 | 15632 | G | A | 15 | 441.53 | CDS | Transition | 0/1 | 7-deoxyloganetin glucosyltransferase (EC 2.4.1.324) (Genipin glucosyltransferase) (UDP-glucose glucosyltransferase 2) (GjUGT2) (UDP-glycosyltransferase 85A24) |
| Scaffold_3259 | 15853 | T | C | 15 | 509.77 | CDS | Transition | 1/1 | 7-deoxyloganetin glucosyltransferase (EC 2.4.1.324) (Genipin glucosyltransferase) (UDP-glucose glucosyltransferase 2) (GjUGT2) (UDP-glycosyltransferase 85A24) |
| Scaffold_3259 | 15979 | G | A | 14 | 392.31 | CDS | Transition | 0/1 | 7-deoxyloganetin glucosyltransferase (EC 2.4.1.324) (Genipin glucosyltransferase) (UDP-glucose glucosyltransferase 2) (GjUGT2) (UDP-glycosyltransferase 85A24) |
| Scaffold_3259 | 16105 | A | G | 21 | 432.77 | CDS | Transition | 0/1 | 7-deoxyloganetin glucosyltransferase (EC 2.4.1.324) (Genipin glucosyltransferase) (UDP-glucose glucosyltransferase 2) (GjUGT2) (UDP-glycosyltransferase 85A24) |
| Scaffold_3259 | 16120 | C | T | 17 | 321.77 | CDS | Transition | 0/1 | 7-deoxyloganetin glucosyltransferase (EC 2.4.1.324) (Genipin glucosyltransferase) (UDP-glucose glucosyltransferase 2) (GjUGT2) (UDP-glycosyltransferase 85A24) |
| Scaffold_69 | 551590 | A | G | 18 | 615.77 | CDS | Transition | 1/1 | AAA-ATPase At2g46620 (EC 3.6.1.3) |
| Scaffold_237 | 11766 | T | C | 74 | 2060.77 | CDS | Transition | 1/1 | ABC transporter B family member 1 (ABC transporter ABCB.1) (AtABCB1) (Multidrug resistance protein 1) (P-glycoprotein 1) (AtPgp1) |
| Scaffold_3328 | 799 | C | T | 10 | 32.77 | CDS | Transition | 0/1 | ABC transporter C family member 3 (ABC transporter ABCC.3) (AtABCC3) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 3) (Glutathione S-conjugate-transporting ATPase 3) (Multidrug resistance-associated protein 3) |
| Scaffold_3328 | 808 | T | C | 10 | 30.77 | CDS | Transition | 0/1 | ABC transporter C family member 3 (ABC transporter ABCC.3) (AtABCC3) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 3) (Glutathione S-conjugate-transporting ATPase 3) (Multidrug resistance-associated protein 3) |
| Scaffold_3528 | 2494 | C | T | 11 | 169.77 | noncoding | Transition | 0/1 | ABC transporter C family member 8 (ABC transporter ABCC.8) (AtABCC8) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 6) (Glutathione S-conjugate-transporting ATPase 6) (Multidrug resistance-associated protein 6) |
| Scaffold_3784 | 44400 | T | C | 16 | 83.77 | CDS | Transition | 0/1 | ABC transporter G family member 32 (ABC transporter ABCG.32) (AtABCG32) (Pleiotropic drug resistance protein 4) (Protein PERMEABLE CUTICLE 1) |
| Scaffold_412 | 43271 | T | C | 12 | 315.78 | noncoding | Transition | 1/1 | ABC transporter G family member 36 (OsABCG36) (Pleiotropic drug resistance protein 9) (OsPDR9) |
| Scaffold_64 | 43527 | C | T | 12 | 126.77 | intron | Transition | 0/1 | ABC transporter G family member 7 (ABC transporter ABCG.7) (AtABCG7) (White-brown complex homolog protein 7) (AtWBC7) |
| Scaffold_23 | 1587345 | C | T | 12 | 91.77 | exon | Transition | 0/1 | Abscisic acid receptor PYR1 (ABI1-binding protein 6) (Protein PYRABACTIN RESISTANCE 1) (Regulatory components of ABA receptor 11) |
| Scaffold_3099 | 40343 | T | C | 69 | 512.77 | noncoding | Transition | 0/1 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic (ACCase subunit beta) (Acetyl-CoA carboxylase carboxyltransferase subunit beta) (EC 2.1.3.15) |
| Scaffold_3099 | 40438 | C | T | 250 | 7545.77 | noncoding | Transition | 0/1 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic (ACCase subunit beta) (Acetyl-CoA carboxylase carboxyltransferase subunit beta) (EC 2.1.3.15) |
| Scaffold_3643 | 28336 | C | T | 105 | 2020.18 | noncoding | Transition | 1/1 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic (ACCase subunit beta) (Acetyl-CoA carboxylase carboxyltransferase subunit beta) (EC 2.1.3.15) |