RGC-1066 SNPs

SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_169 439334 G T 44 1310.77 CDS Transversion 1/1 Transcription termination factor MTERF2, chloroplastic (Mitochondrial transcription termination factor 2) (Protein EMBRYO DEFECTIVE 2219)
Scaffold_169 513805 T G 12 311.78 exon Transversion 1/1 Unannotated
Scaffold_170 60640 G C 11 376.77 CDS Transversion 1/1 Unannotated
Scaffold_170 61362 C A 37 751.77 CDS Transversion 0/1 Unannotated
Scaffold_170 61388 T G 48 941.77 CDS Transversion 0/1 Unannotated
Scaffold_170 61458 A T 64 212.77 CDS Transversion 0/1 Unannotated
Scaffold_170 330646 C G 55 1528.77 intron Transversion 1/1 Putative disease resistance protein RGA4 (RGA4-blb)
Scaffold_170 332023 C A 10 222.84 exon Transversion 1/1 Unannotated
Scaffold_171 32310 G C 16 52.77 CDS Transversion 0/1 Unannotated
Scaffold_171 108164 T G 14 321.78 intron Transversion 1/1 Unannotated
Scaffold_171 298238 G C 10 55.77 intron Transversion 0/1 Unannotated
Scaffold_171 660924 G T 22 637.77 CDS Transversion 1/1 Unannotated
Scaffold_171 662339 A C 10 326.77 intron Transversion 1/1 Unannotated
Scaffold_172 9551 T G 35 255.77 CDS Transversion 0/1 Unannotated
Scaffold_172 9573 A C 37 398.77 CDS Transversion 0/1 Unannotated
Scaffold_172 9575 A C 37 399.77 CDS Transversion 0/1 Unannotated
Scaffold_172 9682 C A 22 407.77 exon Transversion 0/1 Unannotated
Scaffold_172 9832 A T 17 145.77 noncoding Transversion 0/1 Unannotated
Scaffold_172 281928 C G 28 902.77 CDS Transversion 1/1 Unannotated
Scaffold_172 281941 C G 39 192.77 CDS Transversion 0/1 Unannotated