| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_181 | 90606 | A | T | 15 | 427.53 | intron | Transversion | 0/1 | ABC transporter B family member 10 (ABC transporter ABCB.10) (AtABCB10) (Multidrug resistance protein 10) (P-glycoprotein 10) |
| Scaffold_181 | 116662 | T | A | 14 | 52.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_181 | 116663 | T | A | 14 | 43.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_181 | 135358 | A | C | 21 | 83.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_181 | 423073 | C | A | 12 | 289.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_181 | 425676 | A | T | 53 | 1593.77 | CDS | Transversion | 0/1 | Calcium-dependent protein kinase 1 (OsCDPK1) (OsCPK1) (EC 2.7.11.1) |
| Scaffold_181 | 474411 | A | C | 10 | 324.78 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_181 | 474412 | G | T | 10 | 324.78 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_181 | 685889 | T | G | 22 | 68.77 | CDS | Transversion | 0/1 | Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1) |
| Scaffold_181 | 688613 | A | T | 12 | 318.28 | intron | Transversion | 0/1 | Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1) |
| Scaffold_181 | 692591 | G | T | 23 | 631.94 | exon | Transversion | 1/1 | Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1) |
| Scaffold_181 | 743880 | T | A | 13 | 352.78 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_182 | 24852 | A | T | 10 | 33.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_183 | 18698 | T | A | 141 | 5114.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_188 | 16570 | A | T | 172 | 124.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_188 | 17493 | A | T | 23 | 117.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_192 | 33801 | C | G | 15 | 188.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_192 | 35528 | A | C | 212 | 3963.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_192 | 72663 | T | G | 12 | 147.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_193 | 11610 | A | T | 29 | 31.77 | CDS | Transversion | 0/1 | Unannotated |