| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_296 | 22192 | T | G | 141 | 266.77 | noncoding | Transversion | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 22259 | C | G | 121 | 2801.77 | noncoding | Transversion | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 22346 | T | A | 81 | 63.77 | noncoding | Transversion | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 22386 | T | A | 19 | 77.77 | noncoding | Transversion | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 24500 | G | C | 19 | 457.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_296 | 25288 | A | C | 81 | 2214.94 | exon | Transversion | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 68874 | T | A | 67 | 167.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_299 | 35877 | G | C | 12 | 66.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_299 | 35898 | G | C | 16 | 383.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_299 | 79298 | C | G | 10 | 330.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_299 | 79331 | G | T | 28 | 947.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_300 | 27237 | G | C | 14 | 171.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_300 | 27240 | G | T | 14 | 171.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_304 | 73416 | T | G | 13 | 426.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_312 | 15500 | T | A | 34 | 1045.77 | exon | Transversion | 1/1 | EID1-like F-box protein 2 |
| Scaffold_312 | 36232 | C | A | 10 | 61.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_314 | 66694 | C | G | 16 | 171.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_319 | 56826 | G | T | 218 | 7895.77 | CDS | Transversion | 1/1 | 50S ribosomal protein L27, chloroplastic (CL27) |
| Scaffold_319 | 75518 | G | C | 13 | 351.03 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_319 | 75534 | C | A | 11 | 269.84 | exon | Transversion | 0/1 | Unannotated |