| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_538 | 62558 | G | C | 14 | 489.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_538 | 62559 | A | C | 19 | 68.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_539 | 64388 | G | T | 145 | 4437.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_545 | 24631 | C | A | 46 | 1412.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_545 | 25054 | A | T | 44 | 305.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_545 | 25101 | A | T | 38 | 121.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_545 | 25113 | T | G | 43 | 45.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_545 | 25159 | C | A | 36 | 1087.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_545 | 32784 | G | T | 20 | 502.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_545 | 48351 | A | C | 81 | 2319.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_551 | 28356 | G | T | 10 | 172.98 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_553 | 33454 | T | G | 14 | 43.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_553 | 33456 | T | A | 10 | 287.03 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_556 | 50876 | G | T | 15 | 419.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_564 | 52268 | T | G | 12 | 289.77 | exon | Transversion | 0/1 | Pectinesterase/pectinesterase inhibitor PPE8B [Includes: Pectinesterase inhibitor PPE8B (Pectin methylesterase inhibitor PPE8B); Pectinesterase PPE8B (PE PPE8B) (EC 3.1.1.11) (Pectin methylesterase PPE8B)] |
| Scaffold_566 | 3953 | T | G | 12 | 345.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_575 | 66750 | T | A | 24 | 385.77 | CDS | Transversion | 0/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) (Meiotic prophase aminopeptidase 1) |
| Scaffold_583 | 42752 | A | T | 17 | 40.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_591 | 50368 | C | G | 196 | 5879.77 | CDS | Transversion | 1/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (32 kDa thylakoid membrane protein) (Photosystem II Q(B) protein) |
| Scaffold_593 | 19612 | C | A | 17 | 37.77 | intron | Transversion | 0/1 | Unannotated |