| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_594 | 21326 | T | G | 11 | 307.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_596 | 5892 | C | G | 12 | 389.77 | noncoding | Transversion | 1/1 | Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8) |
| Scaffold_596 | 5893 | T | G | 10 | 334.77 | noncoding | Transversion | 1/1 | Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8) |
| Scaffold_609 | 5358 | C | A | 176 | 5295.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_615 | 2183 | T | G | 27 | 65.77 | CDS | Transversion | 0/1 | Serine/threonine-protein kinase BSK6 (EC 2.7.11.1) (Brassinosteroid-signaling kinase 6) |
| Scaffold_616 | 4338 | G | T | 19 | 390.28 | CDS | Transversion | 0/1 | Protein CHROMATIN REMODELING 20 (AtCHR20) (EC 3.6.4.-) (ATP-dependent helicase ATRX) (Transcriptional regulator ATRX) (X-linked helicase II) |
| Scaffold_620 | 5901 | T | A | 16 | 476.77 | CDS | Transversion | 1/1 | Serine/threonine-protein phosphatase PP1 isozyme 3 (EC 3.1.3.16) (Type one protein phosphatase 3) |
| Scaffold_620 | 28361 | A | T | 25 | 574.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_620 | 28558 | T | A | 11 | 368.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_625 | 13129 | A | T | 50 | 1292.77 | exon | Transversion | 1/1 | CRM-domain containing factor CFM2, chloroplastic (Protein CRM FAMILY MEMBER 2) (AtCFM2) |
| Scaffold_626 | 8975 | G | C | 18 | 59.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_628 | 11705 | C | G | 27 | 312.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_629 | 26062 | C | A | 24 | 710.77 | noncoding | Transversion | 1/1 | Hydroquinone glucosyltransferase (EC 2.4.1.218) (Arbutin synthase) |
| Scaffold_632 | 8352 | C | G | 28 | 884.77 | exon | Transversion | 1/1 | Protein JINGUBANG |
| Scaffold_634 | 61359 | G | C | 187 | 6266.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_634 | 61590 | T | G | 30 | 663.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_641 | 28364 | T | A | 11 | 277.18 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_644 | 9547 | A | T | 13 | 39.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_644 | 20934 | G | T | 38 | 47.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_647 | 42508 | G | C | 10 | 101.77 | intron | Transversion | 0/1 | Patatin-like protein 2 (AtPLP2) (EC 3.1.1.-) (Patatin-related phospholipase A IIalpha) (pPLAIIa) (Phospholipase A IIA) (AtPLAIIA) |