| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_647 | 66466 | T | G | 17 | 305.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_649 | 12395 | A | C | 13 | 355.78 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_649 | 19028 | A | C | 47 | 374.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_649 | 19029 | A | T | 60 | 507.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_649 | 19129 | C | G | 36 | 401.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_654 | 24254 | C | A | 17 | 470.77 | exon | Transversion | 1/1 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (EC 2.7.11.1) |
| Scaffold_657 | 44037 | T | A | 20 | 481.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_657 | 45222 | C | A | 11 | 274.8 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_658 | 5377 | A | T | 10 | 262.8 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_662 | 55354 | T | G | 38 | 1449.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_662 | 59360 | G | T | 12 | 277.8 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_665 | 338 | C | A | 21 | 479.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_668 | 7609 | C | A | 76 | 2746.77 | exon | Transversion | 1/1 | Probable calcium-binding protein CML36 (Calmodulin-like protein 36) |
| Scaffold_669 | 43810 | T | G | 44 | 62.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_669 | 43840 | G | T | 88 | 1842.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_669 | 44182 | C | A | 117 | 947.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_669 | 45842 | T | A | 33 | 281.77 | CDS | Transversion | 0/1 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC 1.1.1.34) |
| Scaffold_670 | 26272 | T | A | 36 | 1156.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_672 | 30400 | A | C | 16 | 366.78 | exon | Transversion | 1/1 | Scarecrow-like protein 15 (AtSCL15) (GRAS family protein 25) (AtGRAS-25) |
| Scaffold_672 | 30810 | G | T | 21 | 627.77 | exon | Transversion | 1/1 | Scarecrow-like protein 15 (AtSCL15) (GRAS family protein 25) (AtGRAS-25) |