| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_673 | 4574 | G | C | 32 | 281.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_673 | 4575 | A | C | 21 | 737.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_675 | 26059 | G | T | 147 | 4451.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_679 | 25926 | G | T | 28 | 718.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_679 | 25929 | A | T | 17 | 326.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_684 | 9066 | T | A | 12 | 98.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_684 | 9154 | T | A | 27 | 363.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_685 | 29571 | A | T | 18 | 475.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_690 | 25323 | A | C | 40 | 496.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_691 | 19697 | A | C | 19 | 377.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_703 | 66945 | A | T | 11 | 299.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_712 | 47511 | A | T | 11 | 274.8 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_712 | 58189 | C | A | 23 | 738.78 | intron | Transversion | 1/1 | Thioredoxin M4, chloroplastic (AtTrxm4) |
| Scaffold_721 | 10571 | T | G | 21 | 554.77 | exon | Transversion | 1/1 | Rust resistance kinase Lr10 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10) |
| Scaffold_722 | 46845 | C | G | 17 | 513.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_724 | 37219 | A | C | 61 | 158.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_727 | 3476 | G | T | 20 | 745.77 | intron | Transversion | 1/1 | Ammonium transporter 2 member 3 (OsAMT2;3) |
| Scaffold_732 | 46763 | A | C | 12 | 66.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_732 | 46765 | A | T | 14 | 137.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_739 | 64940 | C | G | 16 | 46.77 | CDS | Transversion | 0/1 | Unannotated |