| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_818 | 11874 | G | T | 10 | 33.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_818 | 60270 | A | T | 10 | 87.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_819 | 55339 | C | A | 11 | 264.8 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_830 | 17214 | A | C | 10 | 338.77 | exon | Transversion | 1/1 | Leucine-rich repeat extensin-like protein 6 (AtLRX6) (LRR/EXTENSIN6) (Cell wall hydroxyproline-rich glycoprotein) |
| Scaffold_830 | 17215 | G | T | 10 | 341.77 | exon | Transversion | 1/1 | Leucine-rich repeat extensin-like protein 6 (AtLRX6) (LRR/EXTENSIN6) (Cell wall hydroxyproline-rich glycoprotein) |
| Scaffold_833 | 10837 | C | G | 13 | 389.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_840 | 25291 | T | A | 54 | 87.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_840 | 25295 | G | T | 18 | 120.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_843 | 53139 | C | A | 18 | 145.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_853 | 1358 | T | A | 16 | 511.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_857 | 61379 | G | T | 29 | 30.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_857 | 61430 | G | C | 53 | 1076.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_861 | 61714 | C | A | 43 | 1000.77 | exon | Transversion | 1/1 | Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic |
| Scaffold_863 | 24831 | G | C | 72 | 1691.77 | CDS | Transversion | 0/1 | Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT) |
| Scaffold_864 | 41641 | C | G | 11 | 64.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_866 | 20160 | A | C | 18 | 538.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_868 | 8058 | A | C | 21 | 605.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_870 | 61338 | A | C | 11 | 271.98 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_870 | 61760 | T | A | 14 | 379.31 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_875 | 27867 | G | C | 19 | 650.77 | CDS | Transversion | 1/1 | Unannotated |