| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1043 | 25870 | G | T | 21 | 94.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1043 | 25938 | C | G | 41 | 485.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1043 | 32204 | C | A | 25 | 237.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1045 | 19391 | T | A | 19 | 598.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_1048 | 54250 | T | G | 16 | 105.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1065 | 31443 | C | A | 12 | 379.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_1072 | 15874 | G | C | 29 | 223.77 | noncoding | Transversion | 0/1 | Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 (AtGDI) |
| Scaffold_1077 | 34873 | A | T | 17 | 468.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1078 | 25810 | G | T | 18 | 88.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1078 | 25853 | A | T | 46 | 1002.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1084 | 53446 | C | A | 17 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1084 | 53447 | C | G | 17 | 46.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1085 | 9256 | T | G | 24 | 260.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1085 | 9257 | A | C | 14 | 89.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1091 | 21372 | C | A | 10 | 82.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1098 | 79 | C | A | 10 | 225.8 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_1101 | 4614 | A | T | 38 | 1151.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1101 | 4615 | A | C | 15 | 333.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1102 | 47015 | G | T | 21 | 601.78 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1102 | 47016 | A | T | 21 | 601.78 | noncoding | Transversion | 0/1 | Unannotated |