| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1309 | 17596 | T | A | 15 | 361.78 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_1309 | 44003 | T | A | 22 | 80.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1318 | 37629 | A | C | 11 | 61.77 | noncoding | Transversion | 0/1 | Isoflavone 3'-hydroxylase (EC 1.14.13.52) (Cytochrome P450 81E9) (Fragment) |
| Scaffold_1318 | 37631 | A | T | 11 | 61.77 | noncoding | Transversion | 0/1 | Isoflavone 3'-hydroxylase (EC 1.14.13.52) (Cytochrome P450 81E9) (Fragment) |
| Scaffold_1351 | 42622 | C | A | 19 | 625.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_1361 | 17203 | C | A | 13 | 299.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1361 | 17212 | C | A | 13 | 306.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1374 | 34564 | T | G | 16 | 537.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1376 | 45247 | C | A | 34 | 1040.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1377 | 8869 | C | A | 12 | 375.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_1385 | 17187 | A | T | 22 | 37.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1385 | 17189 | T | A | 26 | 167.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1387 | 1379 | C | A | 10 | 187.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1392 | 158 | G | C | 29 | 365.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1392 | 313 | C | G | 45 | 586.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1392 | 318 | T | A | 44 | 489.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1399 | 33530 | G | C | 11 | 332.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1413 | 45359 | A | T | 77 | 2052.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_1417 | 50046 | G | C | 12 | 109.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1422 | 1085 | C | A | 17 | 136.77 | noncoding | Transversion | 0/1 | Unannotated |