| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1791 | 27434 | C | A | 20 | 105.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1795 | 37744 | T | G | 15 | 363.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1802 | 40968 | T | A | 21 | 634.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_1827 | 7012 | G | T | 35 | 38.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1830 | 41263 | G | T | 61 | 1903.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_1871 | 36897 | C | A | 11 | 373.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1881 | 25989 | C | A | 14 | 297.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1890 | 40465 | T | A | 57 | 1607.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_1891 | 16334 | C | A | 87 | 2351.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_1891 | 16351 | C | A | 84 | 2421.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_1893 | 27899 | G | T | 10 | 314.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_1910 | 783 | G | C | 69 | 1820.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1910 | 820 | T | G | 19 | 239.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1919 | 24527 | C | G | 60 | 2197.77 | exon | Transversion | 1/1 | Eukaryotic translation initiation factor 1A (eIF-1A) (Eukaryotic translation initiation factor 4C) (eIF-4C) |
| Scaffold_1921 | 41931 | C | G | 10 | 227.84 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_1934 | 39734 | A | C | 34 | 943.74 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1934 | 39735 | A | C | 41 | 1200.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1934 | 40076 | C | A | 12 | 288.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1934 | 40077 | T | G | 11 | 341.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1940 | 41863 | A | T | 11 | 118.77 | CDS | Transversion | 0/1 | Putative disease resistance protein At5g47280 |