| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2402 | 79948 | T | G | 42 | 1419.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_2402 | 160211 | T | A | 14 | 141.77 | intron | Transversion | 0/1 | Callose synthase 3 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 12) |
| Scaffold_2403 | 24156 | G | T | 67 | 2022.77 | CDS | Transversion | 1/1 | Fumarate hydratase 1, mitochondrial (Fumarase 1) (EC 4.2.1.2) |
| Scaffold_2403 | 153739 | A | T | 42 | 1187.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2403 | 156115 | G | C | 40 | 920.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2403 | 156116 | C | A | 18 | 163.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2404 | 101395 | G | T | 195 | 958.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2406 | 8665 | G | T | 13 | 349.78 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_2406 | 161589 | C | A | 19 | 398.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2407 | 6788 | T | G | 12 | 187.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2407 | 150000 | G | T | 19 | 515.77 | exon | Transversion | 1/1 | Transcription initiation factor TFIID subunit 8 (TBP-associated factor 8) (AtTAF8) |
| Scaffold_2408 | 17977 | A | C | 10 | 291.78 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_2408 | 27508 | A | T | 15 | 392.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2408 | 27793 | T | A | 32 | 500.77 | exon | Transversion | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 27803 | T | G | 21 | 237.77 | exon | Transversion | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 27850 | T | A | 15 | 54.77 | exon | Transversion | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 28469 | T | G | 46 | 447.77 | CDS | Transversion | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 28623 | A | T | 42 | 118.77 | CDS | Transversion | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 28656 | G | T | 43 | 154.77 | CDS | Transversion | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 28899 | T | A | 47 | 798.77 | CDS | Transversion | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |