| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2408 | 28946 | T | A | 16 | 400.77 | CDS | Transversion | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 131684 | C | G | 29 | 754.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2408 | 158737 | T | A | 11 | 296.56 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2409 | 80563 | C | A | 24 | 113.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2409 | 108727 | A | C | 14 | 388.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_2410 | 121905 | A | C | 24 | 874.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2412 | 171199 | C | A | 13 | 425.77 | CDS | Transversion | 1/1 | Mitogen-activated protein kinase 4 (AtMPK4) (MAP kinase 4) (EC 2.7.11.24) |
| Scaffold_2417 | 135666 | T | A | 12 | 60.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2422 | 142529 | C | G | 12 | 397.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_2423 | 114214 | G | T | 18 | 494.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2425 | 33738 | T | G | 250 | 6732.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2425 | 33796 | C | A | 12 | 274.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2426 | 19114 | C | A | 11 | 52.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2426 | 25225 | T | G | 13 | 143.77 | exon | Transversion | 0/1 | Probable xyloglucan endotransglucosylase/hydrolase protein 23 (At-XTH23) (XTH-23) (EC 2.4.1.207) |
| Scaffold_2430 | 13272 | C | G | 10 | 338.78 | CDS | Transversion | 1/1 | Uncharacterized GPI-anchored protein At1g61900 |
| Scaffold_2430 | 43629 | T | A | 11 | 273.03 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2430 | 44175 | T | G | 16 | 516.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_2430 | 55515 | C | A | 81 | 2147.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_2432 | 139991 | C | A | 10 | 317.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_2433 | 148201 | G | T | 30 | 158.77 | exon | Transversion | 0/1 | Unannotated |