RGC-1066 SNPs

SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_2454 92441 T A 18 77.77 noncoding Transversion 0/1 Unannotated
Scaffold_2455 77115 C G 71 31.77 intron Transversion 0/1 Unannotated
Scaffold_2456 111833 T G 105 2930.77 CDS Transversion 1/1 Unannotated
Scaffold_2456 113127 T A 40 409.77 exon Transversion 0/1 Unannotated
Scaffold_2463 82595 G T 20 701.77 intron Transversion 1/1 Peroxidase 21 (Atperox P21) (EC 1.11.1.7) (ATP2a/ATP2b) (PRXR5)
Scaffold_2463 129836 G T 44 1390.77 exon Transversion 1/1 Unannotated
Scaffold_2464 62867 T G 36 1171.77 noncoding Transversion 1/1 Protein ELF4-LIKE 4
Scaffold_2473 96720 T A 33 115.77 noncoding Transversion 0/1 Unannotated
Scaffold_2474 57595 T A 18 89.77 intron Transversion 0/1 Unannotated
Scaffold_2475 54336 C A 11 318.56 intron Transversion 0/1 Unannotated
Scaffold_2475 121718 T A 62 1848.77 intron Transversion 0/1 Elongation factor 1-alpha (EF-1-alpha)
Scaffold_2475 122073 T A 250 469.77 CDS Transversion 0/1 Elongation factor 1-alpha (EF-1-alpha)
Scaffold_2475 122076 T A 249 7451.77 CDS Transversion 0/1 Elongation factor 1-alpha (EF-1-alpha)
Scaffold_2479 100881 C A 52 1448.77 exon Transversion 1/1 Unannotated
Scaffold_2479 128364 T G 42 1163.77 exon Transversion 1/1 DELLA protein RGL1 (GRAS family protein 9) (AtGRAS-9) (RGA-like protein 1) (RGA-like protein)
Scaffold_2480 115261 G C 50 1783.77 exon Transversion 1/1 Unannotated
Scaffold_2481 90006 C A 11 407.77 exon Transversion 1/1 Unannotated
Scaffold_2481 90351 C A 10 337.77 intron Transversion 1/1 Unannotated
Scaffold_2484 3706 T A 12 107.77 noncoding Transversion 0/1 Unannotated
Scaffold_2485 104236 T G 15 49.77 exon Transversion 0/1 Chloride channel protein CLC-c (AtCLC-c) (CBS domain-containing protein CBSCLC4)