| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2561 | 18970 | T | G | 32 | 1117.77 | exon | Transversion | 1/1 | Cytochrome P450 98A3 (EC 1.14.-.-) (Protein REDUCED EPIDERMAL FLUORESCENCE 8) (p-coumaroylshikimate/quinate 3'-hydrolxylase) (C3'H) |
| Scaffold_2561 | 21462 | G | C | 18 | 517.77 | noncoding | Transversion | 0/1 | Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4-hydroxylase) (C4H) (CA4H) (Cytochrome P450 73) (Cytochrome P450C4H) |
| Scaffold_2561 | 21463 | T | A | 16 | 394.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2562 | 20213 | T | G | 16 | 340.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2562 | 95121 | A | C | 12 | 421.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2566 | 90412 | G | T | 55 | 1797.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_2570 | 22222 | T | A | 41 | 1308.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2570 | 61324 | C | G | 21 | 354.77 | CDS | Transversion | 0/1 | Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1) |
| Scaffold_2570 | 61360 | G | T | 79 | 101.77 | CDS | Transversion | 0/1 | Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1) |
| Scaffold_2570 | 61372 | T | A | 85 | 155.77 | CDS | Transversion | 0/1 | Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1) |
| Scaffold_2570 | 61501 | A | T | 54 | 136.77 | CDS | Transversion | 0/1 | Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1) |
| Scaffold_2571 | 13926 | T | G | 14 | 172.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2572 | 72010 | A | T | 10 | 264.8 | exon | Transversion | 1/1 | Pentatricopeptide repeat-containing protein At3g57430, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 84) |
| Scaffold_2583 | 8536 | A | T | 56 | 39.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2583 | 8599 | A | C | 250 | 50.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2583 | 8799 | G | C | 75 | 2700.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2585 | 33510 | A | T | 13 | 371.77 | CDS | Transversion | 1/1 | CLP protease regulatory subunit CLPX3, mitochondrial |
| Scaffold_2585 | 72194 | T | G | 29 | 100.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2585 | 72282 | T | G | 29 | 65.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2587 | 15607 | A | T | 14 | 109.77 | noncoding | Transversion | 0/1 | Unannotated |