| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2690 | 23194 | A | T | 12 | 277.8 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2692 | 109392 | G | C | 12 | 234.78 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2693 | 37554 | T | G | 44 | 1270.77 | CDS | Transversion | 1/1 | Endoglucanase 6 (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) |
| Scaffold_2693 | 147556 | A | C | 196 | 5593.77 | exon | Transversion | 1/1 | Probable glucan endo-1,3-beta-glucosidase A6 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Anther-specific protein A6) (Beta-1,3-endoglucanase) (Protein MATERNAL EFFECT EMBRYO ARREST 48) |
| Scaffold_2694 | 80408 | T | A | 12 | 278.8 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2694 | 190362 | A | T | 15 | 484.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2694 | 190483 | G | T | 88 | 3071.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2695 | 106800 | G | T | 19 | 448.77 | CDS | Transversion | 1/1 | UDP-glycosyltransferase 73C2 (EC 2.4.1.-) |
| Scaffold_2695 | 157200 | T | G | 15 | 268.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2695 | 220573 | A | C | 14 | 398.77 | exon | Transversion | 1/1 | Uncharacterized mitochondrial protein AtMg00860 (ORF158) |
| Scaffold_2696 | 20844 | C | A | 13 | 72.77 | intron | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_2696 | 20872 | A | C | 17 | 181.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_2696 | 83964 | T | G | 10 | 61.77 | exon | Transversion | 0/1 | Phosphatidylinositol 3-kinase, root isoform (PI3-kinase) (PI3K) (PtdIns-3-kinase) (EC 2.7.1.137) (SPI3K-5) |
| Scaffold_2697 | 232107 | G | T | 148 | 4318.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_2698 | 3738 | A | T | 68 | 2398.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_2698 | 44776 | A | C | 52 | 48.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2698 | 99253 | C | G | 249 | 6017.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2698 | 99254 | A | T | 245 | 8343.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2698 | 189639 | A | C | 250 | 238.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2698 | 233548 | G | T | 23 | 305.77 | exon | Transversion | 0/1 | Unannotated |