| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2699 | 106293 | T | A | 38 | 110.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2699 | 140895 | C | A | 33 | 1021.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_2699 | 225304 | C | G | 69 | 2591.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2699 | 225306 | A | C | 76 | 2870.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2703 | 19033 | G | C | 14 | 146.9 | noncoding | Transversion | 1/1 | Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47) |
| Scaffold_2704 | 35698 | G | T | 15 | 274.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2705 | 31204 | G | T | 16 | 474.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2706 | 546 | A | C | 138 | 1574.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2706 | 930 | T | G | 16 | 57.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2706 | 1031 | A | T | 17 | 57.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2706 | 1038 | C | A | 14 | 61.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2706 | 1982 | T | A | 22 | 166.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2707 | 42126 | G | T | 12 | 439.77 | exon | Transversion | 1/1 | Cryptochrome DASH, chloroplastic/mitochondrial (Cryptochrome-3) |
| Scaffold_2707 | 42446 | T | A | 17 | 340.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2708 | 13174 | A | T | 10 | 359.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2714 | 43979 | G | T | 250 | 60.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2720 | 20308 | A | C | 16 | 563.77 | noncoding | Transversion | 1/1 | 50S ribosomal protein L20, chloroplastic |
| Scaffold_2720 | 20309 | G | T | 16 | 563.77 | noncoding | Transversion | 1/1 | 50S ribosomal protein L20, chloroplastic |
| Scaffold_2721 | 49960 | C | A | 57 | 1985.77 | noncoding | Transversion | 1/1 | NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 4) (NADH-plastoquinone oxidoreductase chain 4) |
| Scaffold_2723 | 10293 | A | C | 50 | 1409.77 | noncoding | Transversion | 1/1 | Unannotated |