| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2787 | 35049 | A | C | 172 | 6057.77 | noncoding | Transversion | 1/1 | Photosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) |
| Scaffold_2789 | 4005 | A | C | 164 | 5945.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2789 | 4006 | G | T | 250 | 9280.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2790 | 24340 | A | C | 250 | 184.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24420 | A | C | 250 | 773.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24447 | A | C | 250 | 481.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24448 | A | C | 250 | 732.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24467 | A | C | 250 | 229.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24534 | A | T | 247 | 195.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24546 | A | C | 250 | 541.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24841 | A | C | 248 | 308.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24974 | A | T | 250 | 240.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25176 | A | C | 250 | 385.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25226 | T | G | 249 | 110.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25275 | A | C | 249 | 52.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25385 | T | G | 249 | 843.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25463 | A | C | 250 | 943.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25646 | A | C | 250 | 495.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25764 | A | C | 250 | 617.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25900 | A | C | 250 | 1624.77 | intron | Transversion | 0/1 | Unannotated |