| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2890 | 66254 | C | G | 17 | 610.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2893 | 318 | C | G | 64 | 2144.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2893 | 319 | T | G | 37 | 1009.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2895 | 43218 | C | A | 16 | 413.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2901 | 2336 | G | T | 192 | 227.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2901 | 2356 | T | A | 86 | 3096.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2906 | 3942 | G | C | 216 | 8233.77 | exon | Transversion | 1/1 | Catalase (EC 1.11.1.6) |
| Scaffold_2906 | 3946 | T | A | 204 | 7765.77 | exon | Transversion | 1/1 | Catalase (EC 1.11.1.6) |
| Scaffold_2908 | 47329 | G | C | 14 | 295.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2911 | 36128 | G | C | 19 | 604.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2912 | 62278 | G | T | 95 | 3411.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2912 | 62602 | G | T | 37 | 1200.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2912 | 68787 | G | C | 18 | 509.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2916 | 3907 | G | T | 12 | 374.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2917 | 7949 | C | A | 11 | 378.77 | intron | Transversion | 1/1 | Superoxide dismutase [Cu-Zn], chloroplastic (EC 1.15.1.1) |
| Scaffold_2917 | 48470 | T | G | 59 | 1652.77 | noncoding | Transversion | 1/1 | Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47) |
| Scaffold_2924 | 50199 | T | G | 19 | 617.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2924 | 57910 | A | C | 74 | 1141.77 | noncoding | Transversion | 0/1 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |
| Scaffold_2924 | 57911 | G | T | 110 | 1069.77 | noncoding | Transversion | 0/1 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |
| Scaffold_2924 | 57912 | A | C | 142 | 1106.77 | noncoding | Transversion | 0/1 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |