| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2924 | 57914 | G | C | 250 | 892.77 | noncoding | Transversion | 0/1 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |
| Scaffold_2929 | 44937 | T | G | 35 | 33.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2930 | 37108 | A | C | 36 | 41.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2932 | 15017 | G | T | 131 | 552.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2932 | 15027 | A | C | 250 | 48.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2932 | 15049 | A | C | 250 | 281.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2933 | 2610 | C | G | 12 | 81.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2934 | 38659 | A | T | 247 | 339.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2934 | 39078 | C | A | 122 | 403.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2936 | 41128 | A | T | 18 | 43.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2936 | 41129 | A | C | 18 | 43.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2938 | 35773 | A | C | 74 | 2671.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2938 | 35774 | G | T | 84 | 3081.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2939 | 58156 | T | A | 15 | 429.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2939 | 58391 | A | C | 24 | 643.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_2939 | 58460 | A | T | 12 | 364.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_2942 | 7775 | A | C | 35 | 59.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2942 | 26003 | A | C | 10 | 193.78 | exon | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2942 | 26588 | A | C | 11 | 312.78 | CDS | Transversion | 1/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2942 | 26757 | T | G | 11 | 166.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |