| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2943 | 12862 | C | G | 248 | 9498.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_2943 | 12978 | T | A | 250 | 9156.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_2943 | 13004 | C | G | 250 | 9469.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_2943 | 13245 | G | C | 172 | 5311.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_2952 | 23215 | G | C | 15 | 547.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2953 | 5392 | A | T | 23 | 803.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2953 | 5701 | C | A | 20 | 699.77 | noncoding | Transversion | 1/1 | NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 4) (NADH-plastoquinone oxidoreductase chain 4) |
| Scaffold_2953 | 5702 | A | T | 20 | 744.77 | noncoding | Transversion | 1/1 | NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 4) (NADH-plastoquinone oxidoreductase chain 4) |
| Scaffold_2953 | 22484 | A | C | 12 | 388.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_2953 | 29050 | C | A | 14 | 49.74 | noncoding | Transversion | 1/1 | NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 5) (NADH-plastoquinone oxidoreductase subunit 5) |
| Scaffold_2954 | 113 | G | T | 41 | 1050.77 | CDS | Transversion | 1/1 | UDP-glycosyltransferase 88F4 (EC 2.4.1.-) (UDP-glucose:chalcone 2'-O-glucosyltransferase) |
| Scaffold_2962 | 9401 | T | A | 250 | 8655.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2962 | 9537 | A | C | 117 | 4234.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2962 | 9539 | C | G | 62 | 2251.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2963 | 2192 | T | G | 24 | 752.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2963 | 17596 | G | T | 250 | 347.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2966 | 14556 | G | T | 58 | 2012.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2966 | 14558 | C | G | 42 | 1504.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2967 | 50463 | G | C | 23 | 533.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2967 | 51263 | T | G | 11 | 264.8 | CDS | Transversion | 1/1 | Unannotated |