| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2991 | 47021 | T | G | 16 | 382.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2993 | 24110 | A | T | 24 | 792.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2993 | 24111 | G | T | 60 | 2171.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2993 | 24174 | A | T | 250 | 2293.77 | noncoding | Transversion | 0/1 | ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) |
| Scaffold_2993 | 24175 | T | A | 250 | 2304.77 | noncoding | Transversion | 0/1 | ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) |
| Scaffold_3002 | 24176 | C | G | 11 | 348.78 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3004 | 41009 | G | C | 18 | 52.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3004 | 41065 | G | T | 22 | 134.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3005 | 28930 | A | C | 71 | 2429.77 | intron | Transversion | 1/1 | 30S ribosomal protein S3, chloroplastic |
| Scaffold_3005 | 28931 | G | T | 73 | 2545.77 | intron | Transversion | 1/1 | 30S ribosomal protein S3, chloroplastic |
| Scaffold_3008 | 33843 | A | C | 13 | 308.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3010 | 49641 | G | C | 250 | 138.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3010 | 49642 | A | C | 250 | 1208.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3010 | 49643 | G | T | 250 | 73.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3010 | 49765 | A | C | 249 | 398.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3010 | 49900 | T | G | 84 | 2991.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3015 | 42041 | T | G | 12 | 333.78 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3017 | 45894 | G | T | 250 | 147.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3017 | 45895 | A | T | 250 | 556.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3018 | 2938 | T | G | 33 | 973.77 | intron | Transversion | 1/1 | Unannotated |