| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3018 | 62254 | T | G | 51 | 1457.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3022 | 42362 | A | C | 13 | 452.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3022 | 42364 | A | C | 23 | 105.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3025 | 43826 | G | C | 30 | 423.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3025 | 43857 | A | C | 44 | 803.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3025 | 44223 | G | C | 12 | 231.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3025 | 44284 | G | C | 23 | 79.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3025 | 44552 | G | C | 15 | 64.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3025 | 45045 | T | G | 12 | 300.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3025 | 45544 | G | C | 18 | 565.77 | exon | Transversion | 1/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3025 | 45666 | C | A | 32 | 1002.77 | exon | Transversion | 1/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3025 | 45693 | A | C | 19 | 652.77 | exon | Transversion | 1/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3026 | 13688 | T | A | 11 | 294.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3027 | 3929 | C | G | 37 | 1231.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3027 | 49216 | G | T | 70 | 2718.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3027 | 52345 | A | T | 18 | 91.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3027 | 52376 | C | A | 12 | 196.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3027 | 52422 | A | T | 22 | 395.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3029 | 8144 | A | C | 250 | 93.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3029 | 8316 | C | G | 73 | 2637.77 | noncoding | Transversion | 1/1 | Unannotated |