| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3034 | 21390 | A | C | 250 | 1420.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3034 | 21391 | G | T | 248 | 872.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3034 | 21501 | C | G | 126 | 4591.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3034 | 21502 | T | G | 125 | 4522.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3034 | 42652 | A | T | 11 | 324.78 | CDS | Transversion | 1/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3035 | 22251 | C | G | 11 | 245.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3037 | 23193 | G | T | 13 | 101.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3037 | 23206 | T | A | 11 | 340.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3039 | 52735 | G | C | 11 | 150.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3039 | 52791 | A | C | 20 | 178.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3039 | 54068 | C | A | 33 | 39.77 | CDS | Transversion | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54925 | C | A | 157 | 164.77 | intron | Transversion | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55185 | T | G | 32 | 749.77 | CDS | Transversion | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55509 | C | G | 81 | 314.77 | CDS | Transversion | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55752 | T | G | 10 | 39.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3039 | 55971 | C | A | 50 | 1665.77 | CDS | Transversion | 1/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3040 | 25827 | T | G | 149 | 2203.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3040 | 26744 | T | A | 39 | 1010.77 | CDS | Transversion | 1/1 | Exportin-2 (Exp2) (Cellular apoptosis susceptibility protein homolog) (Importin-alpha re-exporter) |
| Scaffold_3040 | 26762 | C | G | 46 | 1275.77 | CDS | Transversion | 1/1 | Exportin-2 (Exp2) (Cellular apoptosis susceptibility protein homolog) (Importin-alpha re-exporter) |
| Scaffold_3040 | 27107 | T | A | 13 | 107.77 | CDS | Transversion | 0/1 | Exportin-2 (Exp2) (Cellular apoptosis susceptibility protein homolog) (Importin-alpha re-exporter) |