| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3060 | 16020 | G | T | 30 | 1039.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3061 | 33628 | A | C | 250 | 320.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3061 | 80588 | C | A | 11 | 78.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3061 | 80858 | G | C | 10 | 328.78 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3062 | 14803 | C | A | 10 | 238.8 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3062 | 23332 | C | G | 46 | 975.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3062 | 23333 | T | A | 153 | 3343.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3062 | 23407 | A | C | 33 | 900.77 | noncoding | Transversion | 1/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein) |
| Scaffold_3062 | 31933 | G | T | 19 | 690.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3062 | 32032 | A | C | 19 | 674.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3064 | 54042 | A | T | 42 | 442.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54154 | A | T | 34 | 100.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54506 | C | A | 38 | 493.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54517 | C | G | 26 | 317.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54553 | T | A | 24 | 870.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3064 | 54554 | A | T | 24 | 245.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54666 | C | A | 24 | 373.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54721 | C | G | 11 | 390.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3064 | 54850 | G | C | 13 | 405.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3064 | 55090 | T | A | 24 | 328.77 | CDS | Transversion | 0/1 | Unannotated |