| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3064 | 55165 | G | T | 250 | 9273.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3064 | 55220 | C | G | 250 | 1143.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 55292 | A | T | 157 | 5453.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3064 | 55393 | A | C | 115 | 983.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 55506 | T | A | 14 | 343.28 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 55656 | A | C | 14 | 141.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3065 | 44754 | T | G | 10 | 308.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3065 | 44978 | T | A | 88 | 2858.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3065 | 45051 | T | G | 38 | 1297.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3065 | 45099 | A | C | 34 | 1167.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3065 | 46958 | A | T | 250 | 431.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3065 | 46959 | G | C | 248 | 693.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3065 | 47259 | C | A | 23 | 567.77 | noncoding | Transversion | 0/1 | 30S ribosomal protein S12-B, chloroplastic |
| Scaffold_3066 | 21409 | A | T | 10 | 295.78 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3068 | 12997 | A | T | 89 | 3361.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3068 | 12998 | G | T | 47 | 1807.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3068 | 54069 | A | C | 250 | 8846.77 | noncoding | Transversion | 1/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein) |
| Scaffold_3068 | 54070 | G | T | 250 | 9137.77 | noncoding | Transversion | 1/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein) |
| Scaffold_3075 | 36184 | A | C | 59 | 2043.77 | noncoding | Transversion | 1/1 | Protein Ycf2 |
| Scaffold_3075 | 36335 | A | T | 37 | 1368.77 | noncoding | Transversion | 1/1 | Protein Ycf2 |