| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3084 | 47569 | C | A | 14 | 510.77 | noncoding | Transversion | 1/1 | Glutathione S-transferase U18 (AtGSTU18) (EC 2.5.1.18) (GST class-tau member 18) (Glutathione S-transferase 29) |
| Scaffold_3087 | 6822 | T | G | 21 | 46.74 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3088 | 47645 | A | T | 250 | 148.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3090 | 26059 | G | T | 43 | 1351.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3092 | 47238 | G | T | 19 | 449.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3093 | 42522 | A | T | 11 | 420.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3099 | 18102 | T | G | 76 | 1174.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3099 | 18145 | G | C | 50 | 1675.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3100 | 42723 | A | T | 13 | 385.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3100 | 42744 | A | C | 22 | 822.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3100 | 42823 | A | T | 40 | 311.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3100 | 42854 | G | C | 25 | 181.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3100 | 42907 | G | T | 11 | 106.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3103 | 33064 | T | A | 11 | 168.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3103 | 33164 | C | G | 23 | 471.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3103 | 42152 | G | C | 11 | 372.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3103 | 42186 | A | T | 226 | 7819.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3103 | 42440 | G | C | 249 | 37.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3103 | 42690 | G | C | 18 | 646.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3106 | 23765 | T | A | 13 | 342.77 | noncoding | Transversion | 0/1 | Unannotated |