| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3108 | 21242 | T | A | 95 | 2757.77 | exon | Transversion | 1/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21311 | G | C | 250 | 3327.77 | exon | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21398 | A | T | 199 | 89.77 | exon | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21422 | C | A | 225 | 2274.77 | exon | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 22590 | G | C | 32 | 201.77 | CDS | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 35867 | A | C | 25 | 36.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3112 | 20862 | C | A | 250 | 160.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3112 | 20863 | C | A | 250 | 3294.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 11385 | A | T | 16 | 344.03 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 11517 | A | T | 28 | 633.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 11628 | T | A | 29 | 786.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3115 | 13539 | G | T | 14 | 205.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 14484 | A | T | 15 | 401.74 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 15155 | G | C | 22 | 378.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 15179 | G | T | 12 | 70.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 22837 | C | G | 250 | 80.77 | noncoding | Transversion | 0/1 | Cytochrome b6 |
| Scaffold_3115 | 23059 | T | A | 23 | 870.77 | noncoding | Transversion | 1/1 | Cytochrome b6 |
| Scaffold_3118 | 54654 | A | C | 249 | 383.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3121 | 13671 | C | A | 23 | 611.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3121 | 13833 | A | T | 19 | 527.77 | CDS | Transversion | 1/1 | Unannotated |