| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3122 | 47939 | T | G | 30 | 92.77 | noncoding | Transversion | 0/1 | Photosystem II D2 protein (PSII D2 protein) (EC 1.10.3.9) (Photosystem Q(A) protein) |
| Scaffold_3123 | 60183 | A | C | 43 | 1451.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3124 | 58317 | T | A | 25 | 899.77 | CDS | Transversion | 1/1 | O-fucosyltransferase 39 (O-FucT-39) (EC 2.4.1.-) (O-fucosyltransferase family protein) |
| Scaffold_3124 | 59055 | T | G | 12 | 234.77 | intron | Transversion | 0/1 | O-fucosyltransferase 39 (O-FucT-39) (EC 2.4.1.-) (O-fucosyltransferase family protein) |
| Scaffold_3126 | 10032 | G | T | 98 | 3730.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3128 | 90 | T | G | 13 | 236.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 293 | T | A | 242 | 2036.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 314 | C | G | 250 | 6978.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 371 | C | A | 250 | 7071.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 780 | C | G | 95 | 1613.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 873 | A | C | 22 | 595.1 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3130 | 40268 | G | T | 28 | 69.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3132 | 27363 | G | C | 14 | 61.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3132 | 27365 | T | A | 15 | 244.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3134 | 22283 | A | T | 10 | 288.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3135 | 34283 | G | T | 140 | 5386.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3136 | 43185 | A | C | 250 | 49.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3136 | 43548 | T | G | 130 | 193.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3136 | 44009 | T | A | 30 | 188.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3138 | 21257 | G | T | 249 | 9366.77 | noncoding | Transversion | 1/1 | Unannotated |