| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3138 | 21259 | T | A | 250 | 4653.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3138 | 21260 | A | T | 250 | 5421.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3138 | 30114 | G | C | 29 | 1114.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3139 | 44612 | A | C | 49 | 1853.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3139 | 44613 | C | G | 60 | 2274.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3139 | 44615 | T | A | 125 | 222.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3139 | 44644 | A | T | 250 | 199.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3139 | 44708 | C | G | 250 | 138.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3140 | 5422 | T | A | 12 | 248.88 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3142 | 15058 | G | T | 18 | 560.94 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3144 | 47787 | C | A | 11 | 33.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3147 | 1807 | A | C | 16 | 203.77 | noncoding | Transversion | 0/1 | ATP synthase epsilon chain, chloroplastic (ATP synthase F1 sector epsilon subunit) (F-ATPase epsilon subunit) |
| Scaffold_3149 | 13799 | A | T | 17 | 234.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3149 | 13816 | T | A | 15 | 398.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3149 | 14047 | T | A | 16 | 86.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3151 | 23314 | A | C | 138 | 428.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3155 | 41732 | C | G | 28 | 456.77 | noncoding | Transversion | 1/1 | DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta') (RNA polymerase subunit beta') |
| Scaffold_3155 | 41911 | G | T | 41 | 1357.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3155 | 43885 | G | T | 141 | 542.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3156 | 19529 | A | C | 59 | 2111.77 | noncoding | Transversion | 1/1 | Unannotated |