| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3156 | 19530 | G | T | 86 | 3169.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3159 | 39790 | A | C | 17 | 600.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3159 | 39791 | G | T | 22 | 785.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3160 | 5229 | A | C | 16 | 36.77 | exon | Transversion | 0/1 | NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 3) (NADH-plastoquinone oxidoreductase subunit 3) |
| Scaffold_3160 | 22431 | C | A | 34 | 863.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3163 | 19958 | A | T | 14 | 347.78 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3163 | 19991 | C | A | 14 | 354.78 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3165 | 42319 | A | T | 124 | 4384.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3165 | 42320 | G | T | 183 | 6280.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3165 | 42356 | A | C | 249 | 754.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3165 | 42403 | A | T | 248 | 479.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3165 | 42505 | A | C | 250 | 764.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3166 | 21931 | C | A | 54 | 2028.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3166 | 22030 | A | T | 249 | 1640.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3166 | 51209 | A | C | 23 | 661.03 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3166 | 52161 | A | T | 16 | 491.96 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3167 | 13775 | T | G | 159 | 96.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3167 | 13778 | C | A | 108 | 3895.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3171 | 14205 | C | A | 31 | 1173.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3171 | 14207 | G | C | 29 | 1094.77 | noncoding | Transversion | 1/1 | Unannotated |