| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3186 | 31522 | A | C | 16 | 516.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3186 | 31523 | G | T | 33 | 1171.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3187 | 53844 | A | T | 13 | 392.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3192 | 57 | A | C | 250 | 176.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3192 | 64 | T | G | 250 | 124.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3192 | 76 | T | A | 250 | 696.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3192 | 306 | C | A | 22 | 565.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3195 | 18303 | C | A | 12 | 436.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3196 | 12716 | C | A | 11 | 387.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3196 | 12718 | G | T | 19 | 683.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3197 | 12985 | C | A | 67 | 2388.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3197 | 12986 | T | G | 33 | 1208.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3198 | 59687 | A | C | 19 | 493.1 | noncoding | Transversion | 1/1 | DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') |
| Scaffold_3198 | 59688 | G | T | 44 | 518.77 | noncoding | Transversion | 0/1 | DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') |
| Scaffold_3200 | 19134 | C | A | 22 | 660.85 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3200 | 26827 | A | C | 250 | 9291.77 | noncoding | Transversion | 1/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (32 kDa thylakoid membrane protein) (Photosystem II Q(B) protein) |
| Scaffold_3200 | 26828 | G | T | 250 | 9412.77 | noncoding | Transversion | 1/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (32 kDa thylakoid membrane protein) (Photosystem II Q(B) protein) |
| Scaffold_3200 | 26837 | A | C | 249 | 87.77 | noncoding | Transversion | 0/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (32 kDa thylakoid membrane protein) (Photosystem II Q(B) protein) |
| Scaffold_3201 | 31405 | T | A | 11 | 129.03 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3201 | 73522 | A | T | 17 | 40.77 | noncoding | Transversion | 0/1 | Unannotated |