| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3222 | 50226 | C | A | 15 | 524.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3222 | 80637 | C | G | 40 | 1493.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3222 | 80638 | A | C | 57 | 2101.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3225 | 15435 | G | T | 36 | 100.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3225 | 15500 | T | A | 17 | 122.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3229 | 28640 | C | G | 13 | 144.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3230 | 5554 | G | T | 250 | 385.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3230 | 5592 | T | A | 250 | 30.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3234 | 19016 | C | A | 10 | 314.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3236 | 33886 | A | C | 43 | 772.77 | exon | Transversion | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3236 | 33909 | C | G | 66 | 208.77 | exon | Transversion | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3236 | 34914 | T | G | 13 | 72.77 | CDS | Transversion | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3236 | 34915 | G | C | 13 | 75.77 | CDS | Transversion | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3236 | 34991 | T | G | 47 | 1110.77 | CDS | Transversion | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3236 | 35091 | G | C | 143 | 4321.77 | CDS | Transversion | 1/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3236 | 35235 | G | T | 35 | 892.78 | CDS | Transversion | 1/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3243 | 22366 | G | C | 13 | 308.03 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3243 | 34091 | T | G | 24 | 688.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3243 | 50586 | A | C | 250 | 290.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3243 | 50683 | A | C | 250 | 196.77 | noncoding | Transversion | 0/1 | Unannotated |