| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3271 | 2204 | A | C | 75 | 2758.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3271 | 2205 | G | T | 83 | 2957.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3273 | 10458 | C | G | 250 | 174.77 | noncoding | Transversion | 0/1 | Cytochrome b6-f complex subunit 4 (17 kDa polypeptide) |
| Scaffold_3273 | 37645 | G | T | 95 | 3350.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3274 | 50865 | A | C | 22 | 31.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3274 | 56950 | A | T | 22 | 126.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3274 | 56968 | T | A | 34 | 558.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3277 | 17375 | A | T | 241 | 8491.77 | noncoding | Transversion | 1/1 | ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha) |
| Scaffold_3277 | 17378 | G | C | 250 | 534.77 | noncoding | Transversion | 0/1 | ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha) |
| Scaffold_3277 | 52496 | A | C | 12 | 275.8 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3280 | 4380 | A | C | 22 | 46.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3280 | 4893 | G | C | 10 | 332.78 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3280 | 5012 | A | C | 44 | 1426.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3280 | 6091 | C | A | 15 | 92.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3280 | 6107 | C | G | 34 | 103.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3281 | 14615 | T | G | 15 | 46.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3288 | 6292 | A | T | 250 | 86.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3289 | 40992 | T | G | 12 | 379.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3298 | 16837 | T | G | 12 | 416.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3299 | 27097 | G | C | 54 | 48.77 | noncoding | Transversion | 0/1 | Unannotated |