| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3299 | 27129 | A | C | 250 | 546.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3299 | 27148 | A | C | 250 | 140.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3299 | 27166 | A | C | 250 | 51.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3299 | 27174 | G | C | 250 | 263.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3299 | 27288 | T | A | 250 | 723.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3299 | 27349 | A | C | 249 | 871.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3299 | 27360 | A | C | 250 | 48.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3301 | 35326 | T | A | 29 | 968.77 | CDS | Transversion | 1/1 | Cellulose synthase-like protein B4 (AtCslB4) (EC 2.4.1.-) |
| Scaffold_3301 | 39085 | A | T | 11 | 52.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3301 | 39086 | G | T | 13 | 344.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3302 | 440 | C | A | 62 | 1739.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3302 | 2536 | G | T | 10 | 69.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3302 | 3362 | C | G | 160 | 1519.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3302 | 3385 | G | T | 159 | 1511.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3302 | 3550 | T | A | 30 | 210.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3306 | 29225 | C | A | 18 | 512.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3306 | 38690 | C | G | 28 | 869.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3306 | 39187 | A | C | 53 | 1548.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3306 | 39380 | T | A | 18 | 522.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3306 | 39443 | C | A | 11 | 344.78 | intron | Transversion | 1/1 | Unannotated |