| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3411 | 18138 | C | A | 10 | 361.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3412 | 2677 | G | T | 43 | 1600.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3414 | 5132 | C | A | 16 | 566.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3415 | 393 | T | G | 44 | 42.77 | noncoding | Transversion | 0/1 | DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) (Fragment) |
| Scaffold_3415 | 401 | G | T | 13 | 485.77 | noncoding | Transversion | 1/1 | DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) (Fragment) |
| Scaffold_3420 | 56501 | A | T | 12 | 237.84 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3420 | 56744 | T | A | 16 | 432.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3420 | 56977 | G | T | 23 | 137.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3425 | 14985 | A | T | 12 | 302.78 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3425 | 14989 | G | C | 13 | 311.78 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3431 | 5736 | G | T | 22 | 145.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3431 | 5738 | G | C | 20 | 49.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3431 | 18661 | C | A | 29 | 1012.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3431 | 18662 | T | G | 28 | 972.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3432 | 18911 | G | C | 248 | 90.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3435 | 10704 | C | G | 15 | 154.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3436 | 52011 | A | C | 12 | 375.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3436 | 52015 | A | C | 250 | 8386.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3438 | 45094 | C | G | 10 | 237.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3440 | 13763 | A | T | 17 | 487.77 | noncoding | Transversion | 0/1 | NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B) |