| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3516 | 56174 | G | C | 12 | 264.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 56200 | T | A | 28 | 67.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 57356 | C | G | 41 | 1104.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 57410 | A | C | 20 | 398.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 57951 | G | T | 13 | 141.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 68284 | G | C | 56 | 1493.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 68344 | T | A | 50 | 247.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3517 | 17685 | A | T | 47 | 1452.77 | exon | Transversion | 1/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3517 | 56541 | C | G | 14 | 429.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3517 | 56578 | C | A | 15 | 439.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3521 | 65228 | T | A | 15 | 371.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3522 | 69427 | A | T | 10 | 350.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3522 | 69428 | G | T | 10 | 344.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3522 | 69493 | A | T | 249 | 2636.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3523 | 52472 | T | A | 13 | 349.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3528 | 2527 | G | T | 16 | 247.77 | noncoding | Transversion | 0/1 | ABC transporter C family member 8 (ABC transporter ABCC.8) (AtABCC8) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 6) (Glutathione S-conjugate-transporting ATPase 6) (Multidrug resistance-associated protein 6) |
| Scaffold_3529 | 15557 | C | A | 60 | 1482.77 | exon | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3529 | 15654 | C | G | 47 | 866.77 | exon | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3529 | 15677 | A | C | 53 | 1748.77 | exon | Transversion | 1/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3529 | 15901 | A | T | 13 | 375.74 | exon | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |